Basic Information
Locus ID:
gene-BS78_03G134700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12680592 | 12681985 | - | gene-BS78_03G134700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 25,327.65 Da | 48.05 | 82.52 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 1.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 187 | 4.64E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 186 | 8.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 3.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.40076 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002455531.1 | E3 ubiquitin-protein ligase EL5 [Sorghum bicolor] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6DUA3 | RING-type E3 ubiquitin transferase OS=Zea mays OX=4577 GN=ATL60_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1452, BH02.1524 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014460 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0233030.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G009280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g20910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G134700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G021900, Chr08G007690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G156100, Tel6E01G148600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG010650, gene_TRIDC3BG014430 |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G087900.1.cds1, TraesCS3B02G103300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb130410_P001, Zm00001eb340160_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48940, nbis-gene-6548 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10213, Zma_g7881 |