Basic Information
Locus ID:
gene-BS78_03G129900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 12005065 | 12007530 | + | gene-BS78_03G129900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 49,156.31 Da | 36.96 | 75.89 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 112 | 428 | 1.2E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 68 | 463 | 3.29E-120 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 63 | 462 | 8.1E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 349 | 370 | 6400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 266 | 287 | 1200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 320 | 341 | 4.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 239 | 265 | 410.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 289 | 310 | 1400.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 66 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | NP_001150436.2 | polygalacturonase precursor [Zea mays] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7DND6 | Polygalacturonase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G400000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology