Basic Information
Locus ID:
gene-BS78_03G104900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9013205 | 9022373 | - | gene-BS78_03G104900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 125,472.96 Da | 39.10 | 78.41 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 483 | 522 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 480 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 949 | 0.02 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 835 | 1097 | 8.93E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 342 | 657 | 6.96E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 537 | 700 | 5.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 755 | 969 | 6.8E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 970 | 1108 | 2.9E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 325 | 532 | 1.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 526 | 569 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1065 | 1097 | 120.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.1E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 615 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1006 | 1042 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 523 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 480 | 3.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 372 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 433 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 1.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 624 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 949 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 446 | 481 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 446 | 481 | 8.755605 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.045877 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 959 | 11.912015 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 467 | 481 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_025816151.1 | protein TPR1 isoform X1 [Panicum hallii] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3HXA4 | WD_REPEATS_REGION domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G430100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology