Basic Information
Locus ID:
gene-BS78_03G081900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6825082 | 6830039 | - | gene-BS78_03G081900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 37,367.30 Da | 38.82 | 73.63 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 54 | 339 | 3.41228E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 90 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 339 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 176 | 6.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 256 | 1.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 132 | 1.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 339 | 5.72E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 186 | 339 | 2.7E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 185 | 3.0E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 218 | 256 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 93 | 132 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 215 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 176 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 90 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 0.0015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 339 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 265 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 100 | 132 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 100 | 132 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 339 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 143 | 177 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 185 | 10.976305 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 119 | 133 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 339 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 77 | 91 | 3.3E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_039791863.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0XC50 | LisH domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG562000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology