Basic Information
Locus ID:
gene-BS78_03G067300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5507312 | 5509479 | + | gene-BS78_03G067300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 34,820.08 Da | 52.70 | 67.62 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 186 | 7.5E-60 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 3 | 109 | 3.8E-33 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 112 | 184 | 6.6E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 319 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021311754.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Sorghum bicolor] | 0 |
| Q92890 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A811PC88 | Ubiquitin fusion degradation protein 1 homolog OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS26508 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology