halophFGD

Basic Information

Locus ID: gene-BS78_03G056100

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: Belongs to the TPP enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	4732859	4736582	+	gene-BS78_03G056100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.17	67,745.26 Da	33.95	86.98	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd07038	TPP_PYR_PDC_IPDC_like	70	236	6.21393E-86	-
CDD	cd02005	TPP_PDC_IPDC	434	616	2.0148E-91	-
Pfam	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	479	604	8.9E-17	IPR011766
Pfam	PF00205	Thiamine pyrophosphate enzyme, central domain	269	385	7.9E-20	IPR012000
Pfam	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	67	240	1.3E-35	IPR012001
SUPERFAMILY	SSF52467	DHS-like NAD/FAD-binding domain	258	410	3.71E-32	IPR029035
SUPERFAMILY	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)	434	628	2.14E-45	IPR029061
SUPERFAMILY	SSF52518	Thiamin diphosphate-binding fold (THDP-binding)	67	250	2.9E-40	IPR029061
Gene3D	G3DSA:3.40.50.1220	-	259	421	1.6E-41	-
Gene3D	G3DSA:3.40.50.970	-	429	615	6.9E-59	-
Gene3D	G3DSA:3.40.50.970	-	64	245	1.8E-57	-
PIRSF	PIRSF036565	Pyruvt_ip_decrb	61	628	2.2E-208	IPR012110

Gene Ontology

Molecular Function:

GO:0000287 (magnesium ion binding) GO:0003824 (catalytic activity) GO:0016831 (carboxy-lyase activity) GO:0030976 (thiamine pyrophosphate binding)

KEGG Pathway

KO Term:

K01568 (pyruvate decarboxylase [EC:4.1.1.1])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R00014 (Pyruvate + Thiamin diphosphate <=> 2-(alpha-Hydroxyethyl)thiamine diphosphate + CO2) R00755 (Acetaldehyde + Thiamin diphosphate <=> 2-(alpha-Hydroxyethyl)thiamine diphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G54960.1	pyruvate decarboxylase-2. pyruvate decarboxylase-2
RefSeq	XP_034597987.1	pyruvate decarboxylase 1-like [Setaria viridis]
Swiss-Prot	A2XFI3	Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2
TrEMBL	A0A4U6UIF8	pyruvate decarboxylase OS=Setaria viridis OX=4556 GN=SEVIR_5G110400v2 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg14755, jg14756, jg18722, jg22121, jg22123, jg32188, jg3246
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15216, gene_15217, gene_22194
Amaranthaceae	Atriplex hortensis	2	Ah003303, Ah017184
Amaranthaceae	Beta vulgaris	2	BVRB_5g103060, BVRB_8g181940
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg41209, Sbi_jg4794, Sbi_jg49759, Sbi_jg7284
Amaranthaceae	Salicornia europaea	2	Seu_jg12718, Seu_jg1454
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001442, GOSA_00017146
Amaranthaceae	Suaeda glauca	6	Sgl46081, Sgl50781, Sgl51678, Sgl52844, Sgl56982, Sgl58124
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000004764, gene:ENSEOMG00000010316 ... gene:ENSEOMG00000023941, gene:ENSEOMG00000026516, gene:ENSEOMG00000046370
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0010070, CQ.Regalona.r1.5BG0010590 ... CQ.Regalona.r1.8AG0006470, CQ.Regalona.r1.8BG0006810
Anacardiaceae	Pistacia vera	5	pistato.v30072530, pistato.v30267320, pistato.v30267330 ... pistato.v30267350, pistato.v30267360
Apiaceae	Apium graveolens	4	Ag10G00944, Ag2G00824, Ag2G01122, Ag6G01053
Arecaceae	Cocos nucifera	6	COCNU_04G003400, COCNU_04G013670, COCNU_06G002470 ... COCNU_12G006690, COCNU_14G001460, scaffold065610G000010
Arecaceae	Phoenix dactylifera	8	gene-LOC103695776, gene-LOC103695777, gene-LOC103699703 ... gene-LOC103718137, gene-LOC103718173, gene-LOC103718720, gene-LOC120112312, gene-LOC120112724
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2015.V1.1, AsparagusV1_05.494.V1.1 ... AsparagusV1_07.672.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G22479, Ftri10G22623, Ftri5G16465, Ftri9G25631
Brassicaceae	Arabidopsis thaliana	4	AT4G33070.1, AT5G01320.1, AT5G01330.1, AT5G54960.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10013008m.g.v1.0, Thhalv10013010m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g07400.v2.2, Sp6g16910.v2.2, Sp6g40640.v2.2
Brassicaceae	Brassica nigra	4	BniB02g033630.2N, BniB02g058210.2N, BniB05g031580.2N ... BniB07g058460.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1317, Ceq08G0991, Ceq08G0992
Casuarinaceae	Casuarina glauca	4	Cgl02G1366, Cgl08G1010, Cgl08G1011, Cgl08G1013
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g16770, gene.Cymno04g16790, gene.Cymno05g17950 ... gene.Cymno05g17970
Dunaliellaceae	Dunaliella salina	3	Dusal.0397s00007.v1.0, Dusal.0397s00009.v1.0 ... Dusal.0397s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g24810, gene.Thate06g02640, gene.Thate06g02660
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.984, evm.TU.LG09.1066, evm.TU.LG12.851
Plantaginaceae	Plantago ovata	7	Pov_00006543, Pov_00006544, Pov_00013274, Pov_00013284 ... Pov_00013385, Pov_00022088, Pov_00038344
Plumbaginaceae	Limonium bicolor	2	Lb2G09235, Lb2G09236
Poaceae	Echinochloa crus-galli	12	AH01.3980, AH02.562, AH03.4143, AH05.2083, BH01.4372 ... BH02.569, BH03.4489, BH05.2217, BH07.2896, CH01.4612, CH02.644, CH05.2298
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0010640, gene-QOZ80_1BG0059150 ... gene-QOZ80_3AG0244370, gene-QOZ80_3BG0283790, gene-QOZ80_5AG0369840, gene-QOZ80_5BG0417430, gene-QOZ80_7AG0582750, gene-QOZ80_7BG0613880
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.2HG0106770.1, HORVU.MOREX.r3.2HG0106810.1 ... HORVU.MOREX.r3.2HG0108380.1, HORVU.MOREX.r3.3HG0235710.1, HORVU.MOREX.r3.3HG0235810.1, HORVU.MOREX.r3.4HG0384560.1
Poaceae	Lolium multiflorum	12	gene-QYE76_037670, gene-QYE76_037671, gene-QYE76_038443 ... gene-QYE76_038557, gene-QYE76_049834, gene-QYE76_049839, gene-QYE76_049841, gene-QYE76_049843, gene-QYE76_050074, gene-QYE76_050081, gene-QYE76_050082, gene-QYE76_054298
Poaceae	Oryza coarctata	7	Oco01G002410, Oco02G002450, Oco05G010710, Oco06G010950 ... Oco09G011940, Oco10G011900, Oco13G016600
Poaceae	Oryza sativa	5	LOC_Os01g06660.1, LOC_Os03g18220.1, LOC_Os05g39310.1 ... LOC_Os05g39320.1, LOC_Os07g49250.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G388400, gene-BS78_03G056100, gene-BS78_K307300 ... gene-BS78_09G173100
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0102426, Pt_Chr0102428, Pt_Chr0102454, Pt_Chr0102455 ... Pt_Chr0102456, Pt_Chr0200534, Pt_Chr0205314, Pt_Chr0205320, Pt_Chr0205410, Pt_Chr0305307
Poaceae	Sporobolus alterniflorus	10	Chr01G018750, Chr01G032110, Chr02G023020, Chr04G008760 ... Chr05G013980, Chr07G002930, Chr12G007500, Chr18G011730, Chr22G005980, Chr24G011740
Poaceae	Thinopyrum elongatum	10	Tel2E01G191900, Tel2E01G192500, Tel2E01G193000 ... Tel2E01G193300, Tel2E01G193400, Tel2E01G985700, Tel2E01G990300, Tel3E01G178800, Tel3E01G178900, Tel4E01G345100
Poaceae	Triticum dicoccoides	12	gene_TRIDC2AG009980, gene_TRIDC2AG010000 ... gene_TRIDC2AG076990, gene_TRIDC2BG010020, gene_TRIDC2BG011950, gene_TRIDC2BG012550, gene_TRIDC2BG084540, gene_TRIDC3AG012480, gene_TRIDC3BG016740, gene_TRIDC3BG016790, gene_TRIDC4AG015320, gene_TRIDC4BG033660
Poaceae	Triticum aestivum	19	TraesCS2A02G088400.1, TraesCS2A02G088600.1 ... TraesCS2A02G552200.1, TraesCS2B02G103900.1, TraesCS2B02G104000.1, TraesCS2B02G583600.1, TraesCS2D02G086000.1, TraesCS2D02G086100.1, TraesCS2D02G086300.1, TraesCS3A02G102100.1, TraesCS3A02G102200.2, TraesCS3B02G119800.1, TraesCS3B02G120000.1, TraesCS3D02G104300.1, TraesCS3D02G104500.1, TraesCS4A02G110900.1, TraesCS4B02G193200.1, TraesCS4D02G194200.1, TraesCSU02G014800.1
Poaceae	Zea mays	5	Zm00001eb013520_P001, Zm00001eb303340_P001 ... Zm00001eb331530_P001, Zm00001eb336190_P001, Zm00001eb351810_P001
Poaceae	Zoysia japonica	11	nbis-gene-13078, nbis-gene-13080, nbis-gene-14203 ... nbis-gene-1951, nbis-gene-24190, nbis-gene-33313, nbis-gene-3608, nbis-gene-54988, nbis-gene-55798, nbis-gene-56925, nbis-gene-6895
Poaceae	Zoysia macrostachya	8	Zma_g10000, Zma_g1440, Zma_g27029, Zma_g28413, Zma_g3831 ... Zma_g5837, Zma_g7642, Zma_g7644
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.398, evm.TU.LG04.2829, evm.TU.LG04.365 ... evm.TU.LG16.821, evm.TU.LG18.533, evm.TU.LG26.502
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g37210, gene.Posoc01g37220, gene.Posoc08g14390
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.321, evm.TU.Scaffold_2_RagTag.609
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-30807, nbisL1-mrna-4583
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3096, nbisL1-mrna-9571
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-21003, nbisL1-mrna-9591
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.1002, evm.TU.utg000015l.194
Rhizophoraceae	Kandelia obovata	2	Maker00005220, Maker00015765
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-2673, nbisL1-mrna-5901
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16678, nbisL1-mrna-16814
Salicaceae	Populus euphratica	9	populus_peu09968, populus_peu11450, populus_peu18085 ... populus_peu24604, populus_peu24605, populus_peu25421, populus_peu25422, populus_peu25443, populus_peu36069
Solanaceae	Lycium barbarum	5	gene-LOC132606779, gene-LOC132621555, gene-LOC132626460 ... gene-LOC132630873, gene-LOC132644276
Solanaceae	Solanum chilense	4	SOLCI001532800, SOLCI002069200, SOLCI003855800 ... SOLCI006769300
Solanaceae	Solanum pennellii	3	gene-LOC107009317, gene-LOC107022972, gene-LOC107032099
Tamaricaceae	Reaumuria soongarica	2	STRG.20624_chr08_-, gene_9739
Tamaricaceae	Tamarix chinensis	2	TC06G0272, TC08G0496
Zosteraceae	Zostera marina	2	Zosma02g21700.v3.1, Zosma02g21710.v3.1