Basic Information
Locus ID:
gene-BS78_03G048300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4172980 | 4178371 | + | gene-BS78_03G048300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 72,845.30 Da | 53.38 | 66.11 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 375 | 504 | 7.23592E-64 | - |
| CDD | cd00201 | WW | 23 | 51 | 3.50854E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 180 | 349 | 1.6E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 387 | 495 | 8.8E-33 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.2E-7 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 228 | 511 | 4.26E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 55 | 6.36E-9 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 129 | 364 | 3.9E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 18 | 59 | 4.6E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 365 | 537 | 2.5E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 415 | 495 | 5.2E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 21 | 54 | 2.3E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 175 | 378 | 9.0E-65 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 390 | 534 | 26.313545 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 156 | 184 | 10.848828 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 361 | 31.722771 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.7036 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 307 | 315 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 625 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_002455105.1 | DEAD-box ATP-dependent RNA helicase 14 isoform X4 [Sorghum bicolor] | 0 |
| Q5VQL1 | DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6FEY1 | Putative DEAD-box ATP-dependent RNA helicase family protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d008725 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology