Basic Information
Locus ID:
gene-BS78_03G046200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4023927 | 4030257 | - | gene-BS78_03G046200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 163,367.09 Da | 38.25 | 103.22 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1262 | 1482 | 3.06704E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 945 | 1239 | 2.70198E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 328 | 615 | 8.79507E-96 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 641 | 841 | 8.92524E-112 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 331 | 594 | 2.2E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 659 | 793 | 3.1E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1281 | 1429 | 5.0E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 947 | 1188 | 5.1E-32 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1252 | 1494 | 2.66E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 933 | 1245 | 7.46E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 638 | 863 | 5.56E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 317 | 623 | 3.4E-31 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 907 | 1245 | 1.8E-63 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 306 | 623 | 2.1E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1248 | 1500 | 3.3E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 624 | 874 | 8.9E-76 | IPR027417 |
| SMART | SM00382 | AAA_5 | 668 | 841 | 8.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1290 | 1481 | 8.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 947 | 1227 | 37.105824 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 641 | 864 | 23.062664 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 327 | 607 | 30.23036 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1264 | 1498 | 17.200348 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 766 | 780 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 919 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_004968378.2 | ABC transporter C family member 3 [Setaria italica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | K3XDS0 | ABC transporter C family member 3 OS=Setaria italica OX=4555 GN=101777732 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology