Basic Information
Locus ID:
gene-BS78_03G036400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBC3
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3182446 | 3187028 | - | gene-BS78_03G036400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.04 | 36,029.17 Da | 62.23 | 85.59 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 140 | 4.52433E-70 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 142 | 8.4E-50 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 141 | 2.62E-58 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 149 | 4.1E-63 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 150 | 1.4E-61 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 150 | 56.328804 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 77 | 92 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 154 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_025816415.1 | uncharacterized protein LOC112893350 [Panicum hallii] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7DS39 | DUF3592 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G506700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.373, BH02.400, CH02.444 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012540, gene-QOZ80_1BG0061190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0237530.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G036400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200055, Pt_Chr0200084 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G006000, Chr08G006420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G193400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG013840, gene_TRIDC3BG018430 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G112200.1, TraesCS3B02G131800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb121890_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6758 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10092 |