Basic Information
Locus ID:
gene-BS78_03G034600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2994576 | 2998519 | - | gene-BS78_03G034600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 46,478.67 Da | 43.41 | 79.00 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 126 | 410 | 2.94871E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 161 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 247 | 282 | 5.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 321 | 2.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 121 | 417 | 8.61E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 184 | 429 | 4.1E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 183 | 2.4E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 285 | 322 | 6.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 238 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 410 | 7.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 282 | 1.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 252 | 285 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 292 | 331 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 161 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 291 | 13.616343 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 269 | 283 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 269 | 283 | 6.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 148 | 162 | 6.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 6.3E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 96 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_002457205.1 | zinc finger CCCH domain-containing protein 17 [Sorghum bicolor] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811P4S5 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS26862 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology