Basic Information
Locus ID:
gene-BS78_03G019700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1660072 | 1661563 | + | gene-BS78_03G019700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.05 | 22,325.09 Da | 73.84 | 78.78 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 129 | 172 | 8.82636E-20 | - |
| Pfam | PF13639 | Ring finger domain | 129 | 172 | 1.5E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 178 | 3.77E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 178 | 2.1E-21 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 126 | 180 | 0.0013 | - |
| SMART | SM00184 | ring_2 | 130 | 171 | 3.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 13.28594 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17450.1 | RING-H2 finger A3A. Encodes a putative RING-H2 finger protein RHA3a. | 0 |
| RefSeq | XP_025819002.1 | E3 ubiquitin-protein ligase EL5-like [Panicum hallii] | 0 |
| O22755 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6SMH8 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM07G38650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.210, BH02.219, CH02.274 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0002090, gene-QOZ80_1BG0050550 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0245590.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_018512, gene-QYE76_051213, gene-QYE76_051214 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G004990 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G019700, gene-BS78_03G019800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204999, Pt_Chr0205104 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028210, Chr05G005930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G248600, Tel3E01G249200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG018440, gene_TRIDC3AG018460 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G139900.1.cds1, TraesCS3A02G140000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24351 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9569 |