Basic Information
Locus ID:
gene-BS78_03G008800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 821577 | 828647 | + | gene-BS78_03G008800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 93,976.03 Da | 50.05 | 90.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 572 | 705 | 2.75798E-23 | - |
| Pfam | PF17862 | AAA+ lid domain | 728 | 770 | 6.4E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 574 | 704 | 2.3E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 534 | 774 | 2.33E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 533 | 705 | 1.4E-97 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 706 | 782 | 1.4E-97 | - |
| SMART | SM00382 | AAA_5 | 570 | 707 | 5.0E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 677 | 696 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 236 | - | - |
| Coils | Coil | Coil | 758 | 778 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_039845848.1 | uncharacterized protein LOC120705524 isoform X4 [Panicum virgatum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0S932 | AAA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG007700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology