Basic Information
Locus ID:
gene-BS78_03G004100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 464489 | 465733 | + | gene-BS78_03G004100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 35,015.52 Da | 42.97 | 69.11 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 149 | 280 | 8.72877E-66 | - |
| CDD | cd16571 | RING-HC_SIAHs | 33 | 71 | 3.96679E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 77 | 279 | 3.3E-77 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 75 | 3.79E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 88 | 283 | 7.85E-48 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 147 | 279 | 2.4E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 143 | 1.3E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 87 | 1.6E-5 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 35 | 71 | 9.376395 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 88 | 148 | 14.11725 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_025816186.1 | E3 ubiquitin-protein ligase SINAT5-like [Panicum hallii] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6QYK6 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM08G00330 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology