Basic Information
Locus ID:
gene-BS78_02G399900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 51588201 | 51592496 | - | gene-BS78_02G399900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 113,746.90 Da | 37.76 | 81.94 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01490 | Ube1_repeat2 | 467 | 976 | 0.0 | - |
| Pfam | PF09358 | Ubiquitin fold domain | 941 | 1019 | 2.5E-11 | IPR018965 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 297 | 366 | 1.8E-22 | IPR032420 |
| Pfam | PF00899 | ThiF family | 448 | 929 | 3.4E-53 | IPR000594 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 225 | 295 | 2.1E-25 | IPR032418 |
| Pfam | PF00899 | ThiF family | 106 | 427 | 4.9E-7 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 617 | 870 | 1.2E-81 | IPR019572 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 443 | 925 | 1.03E-108 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 106 | 433 | 4.51E-66 | IPR035985 |
| Gene3D | G3DSA:3.50.50.80 | - | 97 | 159 | 4.7E-9 | IPR042449 |
| Gene3D | G3DSA:1.10.10.2660 | - | 602 | 877 | 6.9E-166 | IPR042063 |
| Gene3D | G3DSA:2.40.30.180 | - | 213 | 294 | 6.0E-111 | IPR042302 |
| Gene3D | G3DSA:3.40.50.720 | - | 468 | 928 | 6.9E-166 | - |
| Gene3D | G3DSA:3.10.290.60 | - | 943 | 1022 | 4.5E-10 | IPR038252 |
| Gene3D | G3DSA:3.40.50.12550 | - | 171 | 458 | 6.0E-111 | - |
| SMART | SM00985 | UBA_e1_C_a_2 | 908 | 1019 | 2.4E-34 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 101 | 1024 | 0.0 | IPR018075 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 410 | 418 | - | IPR018074 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 678 | 705 | 1.6E-34 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 187 | 214 | 1.6E-34 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 536 | 561 | 1.6E-34 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 489 | 512 | 1.6E-34 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06460.1 | ubiquitin activating enzyme 2. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. | 0 |
| RefSeq | XP_002461268.1 | ubiquitin-activating enzyme E1 3 isoform X1 [Sorghum bicolor] | 0 |
| P31252 | Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum OX=4565 GN=UBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NCM9 | E1 ubiquitin-activating enzyme OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS15047 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology