Basic Information
Locus ID:
gene-BS78_02G392600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 50803183 | 50819369 | + | gene-BS78_02G392600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 111,407.91 Da | 46.39 | 81.81 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 106 | 300 | 2.2313E-92 | - |
| CDD | cd18794 | SF2_C_RecQ | 301 | 436 | 8.46232E-53 | - |
| Pfam | PF00570 | HRDC domain | 652 | 709 | 1.4E-10 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 322 | 426 | 1.0E-18 | IPR001650 |
| Pfam | PF14493 | Helix-turn-helix domain | 766 | 862 | 4.9E-16 | IPR029491 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 120 | 279 | 2.5E-21 | IPR011545 |
| Pfam | PF09382 | RQC domain | 504 | 604 | 5.1E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 439 | 500 | 2.6E-10 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 157 | 441 | 4.34E-53 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 644 | 727 | 3.92E-15 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 498 | 601 | 1.63E-23 | IPR036390 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 645 | 732 | 1.1E-13 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 301 | 502 | 1.4E-54 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 503 | 627 | 5.1E-35 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 91 | 300 | 2.0E-72 | IPR027417 |
| SMART | SM00490 | helicmild6 | 346 | 427 | 6.1E-26 | IPR001650 |
| SMART | SM00341 | hrdc7 | 647 | 727 | 4.3E-4 | IPR002121 |
| SMART | SM00487 | ultradead3 | 114 | 309 | 2.9E-32 | IPR014001 |
| SMART | SM00956 | RQC_2 | 507 | 611 | 2.8E-21 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 109 | 559 | 5.3E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 317 | 468 | 18.027824 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 126 | 293 | 23.964119 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 647 | 727 | 15.384901 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_034581483.1 | probable ATP-dependent DNA helicase RecQ [Setaria viridis] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A4U6WFB6 | ATP-dependent DNA helicase OS=Setaria viridis OX=4556 GN=SEVIR_2G447500v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology