Basic Information
Locus ID:
gene-BS78_02G368400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 48963274 | 48969273 | - | gene-BS78_02G368400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 64,938.53 Da | 44.87 | 83.94 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 133 | 395 | 2.79458E-134 | - |
| Pfam | PF00069 | Protein kinase domain | 134 | 396 | 4.7E-71 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 424 | 578 | 3.95E-18 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 132 | 444 | 1.48E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 407 | 579 | 1.8E-16 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 127 | 222 | 8.2E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 223 | 406 | 6.7E-59 | - |
| SMART | SM00220 | serkin_6 | 134 | 396 | 3.6E-99 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 134 | 396 | 50.717751 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 438 | 473 | 8.711163 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 258 | 270 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 140 | 166 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 60 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 0 |
| RefSeq | XP_039833787.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1-like [Panicum virgatum] | 0 |
| Q10KY3 | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CAMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0WGR3 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG560000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology