Basic Information
Locus ID:
gene-BS78_02G357300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 48248219 | 48248839 | + | gene-BS78_02G357300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 22,475.96 Da | 22.16 | 74.03 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 152 | 198 | 1.8E-21 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 37 | 100 | 8.7E-12 | IPR016073 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 122 | 198 | 8.37E-22 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 37 | 104 | 7.06E-10 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 31 | 200 | 1.5E-48 | IPR011333 |
| SMART | SM00512 | skp1_3 | 35 | 150 | 5.7E-13 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 15 | 201 | 8.2E-49 | IPR016897 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25700.1 | SKP1-like 3. E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3), putative, E3 ubiquitin ligase; similar to fimbriata-associated protein fap1 GI:2673868 from (Antirrhinum majus. Interacts with F-box proteins. | 0 |
| RefSeq | XP_022680105.1 | SKP1-like protein 11 [Setaria italica] | 0 |
| Q9SL93 | SKP1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=ASK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368Q7S0 | SKP1-like protein OS=Setaria italica OX=4555 GN=SETIT_2G396500v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.3762, BH03.4041, CH03.4310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G357300 |