Basic Information
Locus ID:
gene-BS78_02G351400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 47800472 | 47805124 | + | gene-BS78_02G351400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 78,226.21 Da | 46.98 | 83.97 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 5.8E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 423 | 691 | 1.1E-38 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 157 | 199 | 1.2E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 401 | 692 | 9.0E-68 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 26 | 245 | 2.13E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 382 | 498 | 6.2E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 499 | 716 | 1.3E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 254 | 9.4E-49 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 92 | 117 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 185 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 139 | 161 | 4.3 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 141 | 162 | 7.650349 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 695 | 34.590858 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 427 | 450 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 721 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_025800533.1 | protein STRUBBELIG-RECEPTOR FAMILY 7-like isoform X1 [Panicum hallii] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3H4A5 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G448100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology