Basic Information
Locus ID:
gene-BS78_02G350500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 47734071 | 47739405 | - | gene-BS78_02G350500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 112,437.09 Da | 51.96 | 75.03 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 145 | 239 | 1.06603E-31 | - |
| CDD | cd13999 | STKc_MAP3K-like | 741 | 998 | 1.68232E-101 | - |
| Pfam | PF00564 | PB1 domain | 158 | 227 | 3.9E-11 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 738 | 998 | 1.4E-62 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 157 | 245 | 2.55E-15 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 720 | 998 | 6.15E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 728 | 822 | 5.6E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 823 | 1009 | 2.0E-53 | - |
| SMART | SM00666 | PB1_new | 156 | 241 | 8.0E-15 | IPR000270 |
| SMART | SM00220 | serkin_6 | 735 | 1000 | 6.3E-56 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 735 | 1000 | 41.318642 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 860 | 872 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 817 | 830 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 969 | 991 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 854 | 872 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 925 | 947 | 1.4E-14 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16270.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_034581268.1 | uncharacterized protein LOC117844642 [Setaria viridis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6W2I2 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G400400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology