Basic Information
Locus ID:
gene-BS78_02G337600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 46783866 | 46784411 | + | gene-BS78_02G337600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 19,855.60 Da | 68.74 | 73.81 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 57 | 109 | 4.8E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 56 | 117 | 1.15E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 111 | 8.5E-12 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 181 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034605639.1 | E3 ubiquitin-protein ligase RNF149-like [Setaria viridis] | 0 |
| TrEMBL | A0A835BPP7 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_031735 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH09.1386, AH09.1387, AH09.1454, BH09.1568, BH09.1569 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0311420, gene-QOZ80_4AG0312750 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G009150 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g41050.1, LOC_Os04g41070.1, LOC_Os04g41080.1 |
| Poaceae | Paspalum vaginatum | 7 | gene-BS78_02G337600, gene-BS78_03G158300 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010060, Chr25G009600, Chr30G009440 |
| Poaceae | Zea mays | 8 | Zm00001eb078920_P001, Zm00001eb078930_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36940 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19953 |