Basic Information
Locus ID:
gene-BS78_02G327700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 46028791 | 46029495 | + | gene-BS78_02G327700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 26,926.94 Da | 50.83 | 90.81 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 208 | 5.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 214 | 7.07E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 212 | 3.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 207 | 4.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 208 | 10.350093 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034693492.1 | uncharacterized protein LOC117920204 [Vitis riparia] | 0 |
| TrEMBL | A0A438GCY5 | E3 ubiquitin-protein ligase RING1-like OS=Vitis vinifera OX=29760 GN=VvCHDp000839_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G327700, gene-BS78_05G145100 ... |