Basic Information
Locus ID:
gene-BS78_02G301000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 44057312 | 44060573 | + | gene-BS78_02G301000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 76,826.45 Da | 44.65 | 87.99 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 374 | 644 | 1.72406E-98 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 29 | 125 | 1.6E-17 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 161 | 255 | 3.3E-10 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 372 | 570 | 3.9E-47 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 644 | 1.13E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 147 | 257 | 1.6E-19 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 343 | 443 | 4.5E-38 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 444 | 653 | 6.3E-57 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 22 | 129 | 6.1E-21 | IPR038408 |
| SMART | SM00220 | serkin_6 | 368 | 646 | 1.3E-30 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 148 | 257 | 17.69278 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 368 | 644 | 36.979504 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 24 | 129 | 19.403627 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 489 | 501 | - | IPR008271 |
| Coils | Coil | Coil | 308 | 333 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 20. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_025801710.1 | uncharacterized protein LOC112881251 [Panicum hallii] | 0 |
| O65479 | Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=CRK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811N1K6 | Cysteine-rich receptor-like protein kinase 25 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS11747 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3243, BH03.3430, CH03.3635, CH03.3636 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_7AG0570270, gene-QOZ80_7AG0570320 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0139040.1, HORVU.MOREX.r3.7HG0638110.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040820, gene-QYE76_040848 |
| Poaceae | Oryza coarctata | 2 | Oco13G009240, Oco14G009630 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g35140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G301000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304253 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005260, Chr27G012000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G1046700, Tel2E01G404800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028890, gene_TRIDC2BG032550 |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G217200.1, TraesCS2A02G562800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb323230_P001, Zm00001eb323240_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6572 |