Basic Information
Locus ID:
gene-BS78_02G291600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 43424759 | 43430332 | - | gene-BS78_02G291600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 29,944.42 Da | 63.20 | 66.31 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16128 | Ubl_ATG8 | 164 | 266 | 2.27855E-69 | - |
| Pfam | PF04520 | Senescence regulator | 7 | 149 | 3.0E-23 | IPR007608 |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 166 | 269 | 7.0E-50 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 155 | 269 | 2.58E-42 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 144 | 269 | 3.2E-57 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21980.2 | Ubiquitin-like superfamily protein. Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation. | 0 |
| RefSeq | XP_002462921.1 | autophagy-related protein 8A [Sorghum bicolor] | 0 |
| Q2XPP5 | Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VU46 | Autophagy-related protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12321 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.3147, CH03.3504 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G291600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005710, Chr27G011590 |
| Poaceae | Zea mays | 1 | Zm00001eb322590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38322, nbis-gene-900 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5222, Zma_g6514 |