Basic Information
Locus ID:
gene-BS78_02G276600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 42247099 | 42250824 | + | gene-BS78_02G276600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 26,352.82 Da | 68.27 | 86.67 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 196 | 239 | 7.01371E-17 | - |
| Pfam | PF13639 | Ring finger domain | 197 | 239 | 3.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 188 | 244 | 1.82E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 243 | 8.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 238 | 6.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 239 | 12.25323 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17730.1 | NEP-interacting protein 2. Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane. | 0 |
| RefSeq | XP_039792622.1 | NEP1-interacting protein-like 1 [Panicum virgatum] | 0 |
| Q8GT74 | NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0W053 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG492400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19921, jg30920 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23648 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012857 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42361, Sbi_jg44944 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002322 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl31903, Sgl37182, Sgl40118 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000924, gene:ENSEOMG00000001275 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007810, CQ.Regalona.r1.6BG0008540 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30210690, pistato.v30211540 |
| Apiaceae | Apium graveolens | 3 | Ag11G03858, Ag1G01754, Ag3G02082 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G015150, COCNU_08G009040, COCNU_10G009460 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703820, gene-LOC103714528, gene-LOC103722816 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2189.V1.1, AsparagusV1_07.2445.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G01402, Ftri18G08091, Ftri18G26230, Ftri6G27328 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17730.2, AT4G35840.1, AT5G66070.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004883m.g.v1.0, Thhalv10022835m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g30610.v2.2, Sp3g31140.v2.2, Sp7g33620.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g018420.2N, BniB02g087690.2N, BniB03g065890.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0106 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1462, Cgl06G0117 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g00720, gene.Cymno11g10750 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g05260, gene.Thate08g19260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10444, nbisL1-mrna-6557 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2820 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008850, Pov_00020379 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06113, Lb8G35817 |
| Poaceae | Echinochloa crus-galli | 15 | AH01.3032, AH03.2784, AH06.2997, AH08.2324, BH01.3367 ... |
| Poaceae | Eleusine coracana subsp. coracana | 10 | gene-QOZ80_2AG0115490, gene-QOZ80_2BG0169290 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.1HG0055270.1, HORVU.MOREX.r3.3HG0307740.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_012404, gene-QYE76_012405, gene-QYE76_012450 ... |
| Poaceae | Oryza coarctata | 8 | Oco11G017400, Oco12G017600, Oco13G007170, Oco14G007750 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os06g50370.1, LOC_Os07g29600.1, LOC_Os08g43670.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G297200, gene-BS78_02G260100 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0306567, Pt_Chr0401708, Pt_Chr0401735, Pt_Chr0503093 |
| Poaceae | Sporobolus alterniflorus | 19 | Chr02G033530, Chr05G000410, Chr06G028450, Chr0G004330 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel1E01G353400, Tel3E01G652600, Tel7E01G475100 ... |
| Poaceae | Triticum dicoccoides | 10 | gene_TRIDC1AG030970, gene_TRIDC1BG036430 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS1A02G205100.1, TraesCS1B02G218700.1 ... |
| Poaceae | Zea mays | 7 | Zm00001eb022630_P001, Zm00001eb039970_P001 ... |
| Poaceae | Zoysia japonica | 8 | nbis-gene-1049, nbis-gene-17622, nbis-gene-35193 ... |
| Poaceae | Zoysia macrostachya | 9 | Zma_g15621, Zma_g23404, Zma_g24499, Zma_g29977, Zma_g31153 ... |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.1014, evm.TU.LG07.986, evm.TU.LG15.910 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g08800, gene.Posoc08g05430 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.64, evm.TU.Scaffold_6_RagTag.2148 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16982, nbisL1-mrna-203, nbisL1-mrna-85 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14348, nbisL1-mrna-8302 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11679, nbisL1-mrna-5866 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1319, evm.TU.utg000019l.1178 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006791, Maker00006983 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15693, nbisL1-mrna-6585 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2459, nbisL1-mrna-2966 |
| Salicaceae | Populus euphratica | 1 | populus_peu14080 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132618593, gene-LOC132622830, gene-LOC132623357 |
| Solanaceae | Solanum chilense | 3 | SOLCI002043000, SOLCI002961400, SOLCI007388000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107009401, gene-LOC107009419, gene-LOC107014894 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2344 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2466 |
| Zosteraceae | Zostera marina | 2 | Zosma03g27610.v3.1, Zosma05g31330.v3.1 |