Basic Information
Locus ID:
gene-BS78_02G271100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 41821250 | 41822815 | - | gene-BS78_02G271100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 59,232.06 Da | 54.98 | 62.44 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 288 | 330 | 3.6E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 202 | 265 | 3.9E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 340 | 3.28E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 213 | 1.2E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 272 | 8.83E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 215 | 4.0E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 517 | 4.9E-71 | - |
| SMART | SM00647 | ibrneu5 | 201 | 265 | 3.4E-15 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 274 | 336 | 9.4E-6 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 128 | 340 | 40.431862 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 176 | 8.874793 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 314 | 323 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 67 | - | - |
| Coils | Coil | Coil | 474 | 494 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_025803553.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5VQ04 | Putative E3 ubiquitin-protein ligase ARI8 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011840 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology