Basic Information
Locus ID:
gene-BS78_02G240000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 39576886 | 39580320 | - | gene-BS78_02G240000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 61,902.10 Da | 44.20 | 80.05 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 79 | 342 | 1.55391E-116 | - |
| CDD | cd00051 | EFh | 466 | 524 | 4.77366E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 465 | 523 | 5.4E-13 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 403 | 453 | 0.0012 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 80 | 343 | 1.1E-65 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 381 | 536 | 1.1E-40 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 78 | 354 | 4.18E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 361 | 523 | 2.6E-46 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 171 | 354 | 3.7E-59 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 384 | 452 | 2.6E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 82 | 170 | 4.9E-21 | - |
| SMART | SM00054 | efh_1 | 390 | 418 | 0.91 | IPR002048 |
| SMART | SM00054 | efh_1 | 462 | 490 | 0.013 | IPR002048 |
| SMART | SM00054 | efh_1 | 426 | 454 | 20.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 498 | 526 | 2.1E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 80 | 343 | 1.1E-85 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 458 | 493 | 13.564962 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 80 | 343 | 44.866276 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 386 | 421 | 14.150764 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 494 | 529 | 13.118635 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 471 | 483 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 86 | 109 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 205 | 217 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 507 | 519 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 399 | 411 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 50 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_004957332.1 | calcium-dependent protein kinase 22 [Setaria italica] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A811NFN8 | Calcium-dependent protein kinase 24 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS16560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology