Basic Information
Locus ID:
gene-BS78_02G232600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 38978531 | 38980343 | - | gene-BS78_02G232600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 18,964.32 Da | 53.91 | 66.14 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 131 | 168 | 6.02189E-7 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 130 | 175 | 5.1E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 175 | 9.5E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 179 | 3.3E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 131 | 168 | 2.8E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 169 | 11.486073 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 146 | 155 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 84 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_039795827.1 | uncharacterized protein LOC120661164 [Panicum virgatum] | 0 |
| TrEMBL | A0A3L6E618 | RING-type domain-containing protein OS=Zea mays OX=4577 GN=Zm00014a_018828 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology