Basic Information
Locus ID:
gene-BS78_02G217400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 37804549 | 37805022 | - | gene-BS78_02G217400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 16,538.89 Da | 49.32 | 100.19 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 98 | 138 | 7.24885E-16 | - |
| Pfam | PF13639 | Ring finger domain | 94 | 138 | 2.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 148 | 1.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 148 | 5.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 137 | 9.3E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 95 | 138 | 0.0014 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 138 | 13.241681 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | NP_001354930.1 | Probable E3 ubiquitin-protein ligase XERICO [Zea mays] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6FSG7 | Putative E3 ubiquitin-protein ligase XERICO OS=Zea mays OX=4577 GN=XERICO_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology