Basic Information
Locus ID:
gene-BS78_02G200900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 36346312 | 36350012 | - | gene-BS78_02G200900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.50 | 35,454.29 Da | 81.58 | 67.17 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 177 | 263 | 5.3E-28 | IPR012866 |
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 123 | 176 | 1.7E-21 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 239 | 5.0E-6 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G08460.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_025803145.1 | uncharacterized protein LOC112882329 [Panicum hallii] | 0 |
| TrEMBL | A0A8T0VSB5 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_2NG351000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0537030, gene-QOZ80_6BG0490360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485840.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005592 |
| Poaceae | Oryza coarctata | 2 | Oco17G006270, Oco18G006450 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g27860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G200900 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G015000, Chr21G014050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G379600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG037150, gene_TRIDC5BG039130 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G234600.1.cds1, TraesCS5B02G233100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb100600_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32648 |