Basic Information
Locus ID:
gene-BS78_02G199800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 36240867 | 36243465 | + | gene-BS78_02G199800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 74,571.76 Da | 42.64 | 90.68 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 620 | 665 | 1.38594E-22 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 611 | 668 | 3.99E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 609 | 672 | 2.7E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 620 | 666 | 2.6E-5 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 621 | 665 | - | IPR019786 |
| ProSitePatterns | PS01306 | Uncharacterized protein family UPF0054 signature. | 160 | 170 | - | IPR020549 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 611 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_021309975.1 | PHD finger protein PERSISTENT TAPETAL CELL 1 [Sorghum bicolor] | 0 |
| Q67V61 | PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811NJB0 | PHD domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS16972 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology