Basic Information
Locus ID:
gene-BS78_02G192600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 35613098 | 35614891 | - | gene-BS78_02G192600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 33,991.89 Da | 44.03 | 71.86 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 181 | 226 | 1.0E-7 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 241 | 289 | 5.0E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 177 | 4.82E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 229 | 6.53E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 290 | 1.98E-11 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 237 | 301 | 4.2E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 182 | 9.8E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 168 | 236 | 0.028 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 237 | 289 | 0.39 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 144 | 8.550227 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 88 | 313 | 18.264574 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 117 | 126 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002462435.1 | E3 ubiquitin-protein ligase RNF144B isoform X2 [Sorghum bicolor] | 0 |
| TrEMBL | A0A811NH49 | RBR-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS17060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.2027, BH03.2378 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481120.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco17G005560, Oco18G005670 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g26460.1, LOC_Os11g38710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG034790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215700.1, TraesCS5B02G214200.1 ... |