Basic Information
Locus ID:
gene-BS78_02G183400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 34726276 | 34729737 | + | gene-BS78_02G183400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 30,796.79 Da | 27.36 | 88.50 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 161 | 224 | 8.4E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 17 | 138 | 1.7E-7 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 14 | 268 | 1.97E-87 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1 | 271 | 8.5E-96 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_004956826.1 | probable CCR4-associated factor 1 homolog 7 [Setaria italica] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A368Q0W9 | poly(A)-specific ribonuclease OS=Setaria italica OX=4555 GN=SETIT_2G205600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology