Basic Information
Locus ID:
gene-BS78_02G173400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 33627791 | 33634376 | + | gene-BS78_02G173400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 35,898.12 Da | 60.87 | 49.53 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 241 | 289 | 7.7E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 124 | 236 | 2.0E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 233 | 293 | 2.06E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 94 | 233 | 2.8E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 234 | 301 | 3.4E-21 | IPR013083 |
| SMART | SM00249 | PHD_3 | 241 | 288 | 3.6E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 122 | 237 | 1.9E-41 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 239 | 290 | 9.312 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 122 | 237 | 23.824196 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 242 | 287 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 317 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_002460174.1 | chromatin remodeling protein EBS isoform X2 [Sorghum bicolor] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | C5XC21 | Chromatin remodeling protein EBS-like OS=Sorghum bicolor OX=4558 GN=SORBI_3002G192500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology