Basic Information
Locus ID:
gene-BS78_02G156700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 30943510 | 30961418 | - | gene-BS78_02G156700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 31,934.66 Da | 53.63 | 79.68 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1 | 220 | 4.9E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 231 | 1.14E-58 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 34 | 2.5E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 35 | 238 | 8.6E-60 | - |
| SMART | SM00220 | serkin_6 | 1 | 223 | 2.4E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 223 | 30.32239 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 74 | 86 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_039813986.1 | probable kinase CHARK [Panicum virgatum] | 0 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6QSV3 | Protein kinase domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM04G15100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH03.1956 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0486290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004657 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G156700 |
| Poaceae | Triticum aestivum | 4 | TraesCS2B02G485000.1, TraesCS2D02G464000.1 ... |