Basic Information
Locus ID:
gene-BS78_02G156100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 30810267 | 30812419 | + | gene-BS78_02G156100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 75,224.28 Da | 42.35 | 87.61 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 37 | 267 | 9.93366E-77 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 369 | 641 | 5.2E-42 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 23 | 270 | 3.0E-60 | IPR001220 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 647 | 3.33E-71 | IPR011009 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 25 | 272 | 3.31E-58 | IPR013320 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 448 | 650 | 2.2E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 338 | 447 | 5.7E-24 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 21 | 272 | 9.4E-64 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 367 | 648 | 33.870026 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 491 | 503 | - | IPR008266 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 153 | 159 | - | IPR019825 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 373 | 396 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_025801521.1 | L-type lectin-domain containing receptor kinase IX.1-like [Panicum hallii] | 0 |
| Q9LXA5 | L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7ERB8 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G225500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1787, CH03.1958 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0100870.1.CDS1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G156100, gene-BS78_05G241600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107997 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G012180 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G102500, Tel3E01G784700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG004410, gene_TRIDC2AG004420 |
| Poaceae | Triticum aestivum | 11 | TraesCS2B02G054500.1, TraesCS2D02G040700.1 ... |