HalophFGD

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Basic Information
Locus ID: gene-BS78_02G152400
Species & Taxonomic ID: Paspalum vaginatum & 158149
Genome Assembly: GCA_026573395.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr2 30080535 30081812 - gene-BS78_02G152400
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.95 45,968.11 Da 38.18 87.22 0.04
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 2 39 1.9E-5 IPR001810
SUPERFAMILY SSF81383 F-box domain 1 139 1.74E-7 IPR036047
ProSiteProfiles PS50181 F-box domain profile. 1 45 8.570165 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_012699787.1 uncharacterized protein LOC101761069 [Setaria italica] 0
TrEMBL A0A4U6VUM9 F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G182000v2 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 2 AH03.1577, CH03.1908
Poaceae Paspalum vaginatum 1 gene-BS78_02G152400
Poaceae Zoysia japonica 1 nbis-gene-55959
Poaceae Zoysia macrostachya 1 Zma_g32376
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