Basic Information
Locus ID:
gene-BS78_02G151600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 29999837 | 30005116 | - | gene-BS78_02G151600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 46,111.90 Da | 53.84 | 78.65 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 337 | 379 | 5.34354E-18 | - |
| Pfam | PF13639 | Ring finger domain | 338 | 379 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 328 | 383 | 5.5E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 384 | 1.5E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 337 | 379 | 0.0077 | IPR011016 |
| SMART | SM00184 | ring_2 | 338 | 378 | 2.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 379 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 66 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034581956.1 | E3 ubiquitin-protein ligase At1g63170-like isoform X1 [Setaria viridis] | 0 |
| Q9LN71 | E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana OX=3702 GN=At1g12760 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZTQ4 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G176000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.1564, BH03.1741, CH03.1897 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0532250, gene-QOZ80_6BG0485760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473540.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004523, gene-QYE76_017307 |
| Poaceae | Oryza coarctata | 1 | Oco18G002500 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15430.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G151600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702624, Pt_Chr0702648 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G012030, Chr11G010200, Chr14G012330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G310000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029800, gene_TRIDC5BG031490 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G183200.1, TraesCS5B02G181400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb309900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35533 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32371 |