Basic Information
Locus ID:
gene-BS78_02G150400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 29666651 | 29673688 | - | gene-BS78_02G150400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 157,367.23 Da | 43.54 | 92.42 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 60 | 132 | 2.82082E-7 | IPR038005 |
| Pfam | PF03106 | WRKY DNA -binding domain | 1301 | 1360 | 2.4E-23 | IPR003657 |
| Pfam | PF18052 | Rx N-terminal domain | 56 | 128 | 1.9E-11 | IPR041118 |
| Pfam | PF02365 | No apical meristem (NAM) protein | 1039 | 1143 | 7.3E-9 | IPR003441 |
| Pfam | PF00931 | NB-ARC domain | 215 | 460 | 1.1E-36 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 520 | 920 | 2.72E-16 | - |
| SUPERFAMILY | SSF101941 | NAC domain | 1036 | 1169 | 3.4E-18 | IPR036093 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 207 | 471 | 1.25E-53 | IPR027417 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 1296 | 1361 | 7.59E-24 | IPR036576 |
| Gene3D | G3DSA:1.10.8.430 | - | 371 | 462 | 2.8E-11 | IPR042197 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 1033 | 1172 | 3.0E-15 | IPR036093 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 588 | 939 | 2.1E-17 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 36 | 160 | 1.3E-14 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 204 | 359 | 1.5E-28 | IPR027417 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 1285 | 1362 | 7.6E-26 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 1300 | 1362 | 7.3E-36 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 1295 | 1358 | 22.894032 | IPR003657 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 1021 | 1170 | 20.010563 | IPR003441 |
| PRINTS | PR00364 | Disease resistance protein signature | 237 | 252 | 1.3E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 309 | 323 | 1.3E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 406 | 420 | 1.3E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1364 | 1392 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_002462195.1 | uncharacterized protein LOC8071916 [Sorghum bicolor] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | C5X9Q6 | WRKY domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G168300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology