Basic Information
Locus ID:
gene-BS78_02G135100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 23488953 | 23494481 | + | gene-BS78_02G135100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 86,024.46 Da | 67.25 | 67.93 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 704 | 744 | 3.35518E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 702 | 749 | 1.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 704 | 750 | 3.89E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 685 | 756 | 2.5E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 705 | 744 | 10.910707 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 303 | - | - |
| Coils | Coil | Coil | 634 | 654 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025800978.1 | uncharacterized protein LOC112880532 [Panicum hallii] | 0 |
| TrEMBL | A0A8T0VYH4 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG266400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology