Basic Information
Locus ID:
gene-BS78_02G134600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 23348820 | 23354007 | + | gene-BS78_02G134600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 87,054.30 Da | 43.35 | 89.01 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 707 | 748 | 3.77764E-25 | - |
| CDD | cd01989 | STK_N | 28 | 185 | 5.37701E-42 | - |
| Pfam | PF04564 | U-box domain | 703 | 773 | 3.1E-20 | IPR003613 |
| Pfam | PF00582 | Universal stress protein family | 28 | 150 | 6.2E-7 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 416 | 669 | 9.4E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 671 | 3.24E-64 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 31 | 148 | 5.86E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 690 | 774 | 3.44E-28 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 393 | 486 | 2.3E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 702 | 774 | 7.9E-30 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 26 | 150 | 9.5E-9 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 487 | 686 | 1.0E-42 | - |
| SMART | SM00504 | Ubox_2 | 706 | 769 | 4.7E-32 | IPR003613 |
| SMART | SM00220 | serkin_6 | 414 | 681 | 1.9E-23 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 702 | 775 | 41.266956 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 414 | 681 | 31.820593 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 532 | 544 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 365 | 385 | - | - |
| Coils | Coil | Coil | 264 | 294 | - | - |
| Coils | Coil | Coil | 316 | 336 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_002459853.2 | U-box domain-containing protein 33 [Sorghum bicolor] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811NRH1 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS17664 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology