Basic Information
Locus ID:
gene-BS78_02G117800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 19251288 | 19271829 | + | gene-BS78_02G117800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 167,410.53 Da | 47.56 | 91.77 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 529 | 657 | 5.92183E-24 | IPR038005 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 326 | 425 | 2.8E-12 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 32 | 295 | 6.6E-51 | IPR000719 |
| Pfam | PF00931 | NB-ARC domain | 719 | 942 | 5.3E-37 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 532 | 616 | 4.3E-17 | IPR041118 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 679 | 956 | 1.16E-58 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1020 | 1401 | 7.14E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 19 | 305 | 1.24E-70 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 318 | 449 | 1.13E-17 | IPR008962 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 128 | 319 | 2.0E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 3 | 105 | 2.1E-23 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 672 | 847 | 8.7E-32 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 941 | 1034 | 3.9E-14 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 855 | 940 | 7.1E-12 | IPR042197 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 320 | 442 | 1.1E-21 | IPR013783 |
| Gene3D | G3DSA:1.20.5.4130 | - | 531 | 642 | 2.1E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1073 | 1435 | 3.4E-25 | IPR032675 |
| SMART | SM00220 | serkin_6 | 32 | 295 | 1.8E-40 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 323 | 439 | 16.133034 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 32 | 307 | 39.014801 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 38 | 60 | - | IPR017441 |
| PRINTS | PR00364 | Disease resistance protein signature | 723 | 738 | 1.1E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 794 | 808 | 1.1E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 891 | 905 | 1.1E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 497 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_044352413.1 | disease resistance protein RGA5-like isoform X1 [Triticum aestivum] | 0 |
| Q2R8L1 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6FZK8 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000240 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G117800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0601224 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G885000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3BG085690, gene_TRIDC3BG085710 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3B02G593500.1, TraesCS3B02G611100.1 ... |