Basic Information
Locus ID:
gene-BS78_02G107100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17754613 | 17757716 | - | gene-BS78_02G107100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 48,269.21 Da | 59.45 | 99.62 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 58 | 4.0E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 132 | 349 | 6.83E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 68 | 2.75E-13 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 107 | 391 | 2.0E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 62 | 3.0E-8 | - |
| SMART | SM00256 | fbox_2 | 24 | 63 | 1.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 54 | 9.709425 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22700.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_021310175.1 | F-box/LRR-repeat protein 25-like isoform X2 [Sorghum bicolor] | 0 |
| Q7X7A4 | MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 | 0 | |
| TrEMBL | A0A811NK33 | F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS18090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology