Basic Information
Locus ID:
gene-BS78_02G081200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8457488 | 8467981 | + | gene-BS78_02G081200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 88,424.56 Da | 70.21 | 59.51 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 398 | 424 | 7.6E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 364 | 392 | 6.6E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 357 | 393 | 2.86E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 356 | 394 | 4.7E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 395 | 427 | 4.0E-9 | - |
| SMART | SM00547 | zf_4 | 399 | 423 | 4.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 366 | 390 | 4.9E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 364 | 393 | 10.037277 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 397 | 426 | 9.427498 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 401 | 420 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 368 | 387 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 648 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0VF23 | Zinc finger protein VAR3, chloroplastic OS=Panicum virgatum OX=38727 GN=PVAP13_2NG289200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology