Basic Information
Locus ID:
gene-BS78_02G079300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8189929 | 8195593 | + | gene-BS78_02G079300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 89,193.87 Da | 51.18 | 75.86 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 749 | 797 | 1.1E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 747 | 797 | 5.3E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 742 | 802 | 8.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 752 | 791 | 0.01 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 752 | 792 | 10.232069 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 338 | - | - |
| Coils | Coil | Coil | 619 | 650 | - | - |
| Coils | Coil | Coil | 697 | 717 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03365.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004956006.1 | putative E3 ubiquitin-protein ligase RF298 [Setaria italica] | 0 |
| Q9ZVT8 | Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana OX=3702 GN=RF4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0A8XTM1 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0679s00005.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.879, BH03.1007, CH03.1169 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0634630 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002218 |
| Poaceae | Oryza coarctata | 2 | Oco13G005350, Oco14G006640 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G079300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703507 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G006820, Chr28G006320 |
| Poaceae | Zea mays | 1 | Zm00001eb094680_P002 |