Basic Information
Locus ID:
gene-BS78_02G057100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin- protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5760867 | 5764067 | - | gene-BS78_02G057100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 56,461.16 Da | 47.30 | 81.41 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 106 | 4.8E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 149 | 2.7E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 57 | 97 | 9.361642 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 37 | - | - |
| Coils | Coil | Coil | 316 | 426 | - | - |
| Coils | Coil | Coil | 455 | 475 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022680424.1 | uncharacterized protein LOC101782772 [Setaria italica] | 0 |
| TrEMBL | A0A4U6VNV7 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G061500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.415, BH03.506, BH03.628, CH03.594 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G057100 |
| Poaceae | Zea mays | 1 | Zm00001eb301580_P002 |