Basic Information
Locus ID:
gene-BS78_02G053400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5347063 | 5348313 | + | gene-BS78_02G053400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.10 | 45,272.77 Da | 41.28 | 84.28 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 82 | 368 | 9.4E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 84 | 376 | 5.26E-61 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 160 | 376 | 6.3E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 75 | 159 | 1.0E-5 | - |
| SMART | SM00220 | serkin_6 | 74 | 368 | 9.1E-50 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 74 | 368 | 35.19862 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 191 | 203 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63370.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_002462879.1 | putative cyclin-dependent kinase F-2 [Sorghum bicolor] | 0 |
| Q2QSL4 | Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 | 0 | |
| TrEMBL | C5X973 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G307000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH05.3388, BH02.2066, BH05.3383, BH05.3388, CH02.2246 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0125170, gene-QOZ80_2BG0180810 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0202600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_004059, gene-QYE76_004065, gene-QYE76_013555 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_02G052200, gene-BS78_02G052500, gene-BS78_K027400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304003, Pt_Chr0505477 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G398900, Tel5E01G283300 |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G252500.1.cds1, TraesCS2A02G502000.1.cds1 ... |