Basic Information
Locus ID:
gene-BS78_02G039800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3904375 | 3911332 | - | gene-BS78_02G039800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.98 | 136,766.17 Da | 41.82 | 101.70 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1015 | 1227 | 6.83604E-108 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 366 | 3.19829E-72 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 695 | 989 | 1.11362E-75 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 392 | 592 | 1.56875E-98 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 697 | 937 | 6.7E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 410 | 544 | 7.0E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1034 | 1182 | 5.1E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 106 | 334 | 1.5E-18 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1010 | 1227 | 1.71E-62 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 388 | 614 | 6.58E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 693 | 999 | 5.36E-45 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 93 | 338 | 1.44E-23 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 376 | 627 | 5.3E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 84 | 375 | 1.8E-34 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 662 | 991 | 1.6E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1002 | 1227 | 1.2E-73 | IPR027417 |
| SMART | SM00382 | AAA_5 | 419 | 592 | 1.7E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1043 | 1227 | 3.2E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1017 | 1227 | 12.271736 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 392 | 615 | 22.675844 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 697 | 977 | 32.348518 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 104 | 338 | 21.810961 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 517 | 531 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 673 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NFV7 | ABC transporter C family member 3 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS14523 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology