Basic Information
Locus ID:
gene-BS78_02G031800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2926096 | 2930368 | - | gene-BS78_02G031800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 55,266.70 Da | 50.12 | 101.65 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 37 | 75 | 4.8E-4 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 188 | 332 | 2.64E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 103 | 1.83E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 177 | 367 | 5.8E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 32 | 77 | 1.7E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02910.2 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_039796474.1 | putative FBD-associated F-box protein At5g50270 [Panicum virgatum] | 0 |
| Q9LYZ4 | F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana OX=3702 GN=At5g02910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368PWT9 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G029700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.203, CH03.323 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0629230.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041302, gene-QYE76_041311 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G031700, gene-BS78_02G031800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404642, Pt_Chr0404705, Pt_Chr0604369 |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G701900, Tel6E01G702100, Tel6E01G702600 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG057750, gene_TRIDC6BG067240 |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G389500.1, TraesCS6A02G390000.1 ... |