Basic Information
Locus ID:
gene-BS78_02G028500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2694243 | 2695422 | - | gene-BS78_02G028500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 39,337.46 Da | 45.05 | 95.92 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 7 | 139 | 1.58145E-12 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 198 | 264 | 8.7E-8 | IPR000210 |
| Pfam | PF00917 | MATH domain | 21 | 137 | 9.0E-5 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 170 | 265 | 7.06E-10 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 5 | 144 | 2.78E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 179 | 266 | 2.4E-11 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 4 | 141 | 1.5E-18 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 267 | 338 | 1.7E-11 | - |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 3 | 138 | 15.941849 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 166 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_039793103.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EKK4 | BTB domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G021100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_7AG0554940, gene-QOZ80_7AG0554950 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G002020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g18830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G028500 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001810, Chr28G000690 |