Basic Information
Locus ID:
gene-BS78_02G013400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1185446 | 1185847 | - | gene-BS78_02G013400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 15,216.25 Da | 40.88 | 90.83 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 87 | 133 | 5.7E-7 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 8 | 76 | 3.8E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 74 | 133 | 2.19E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 77 | 2.0E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.1E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 81 | 133 | 3.6E-11 | - |
| SMART | SM00213 | ubq_7 | 82 | 133 | 26.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 3 | 75 | 4.9E-15 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 82 | 133 | 11.398631 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 24 | 74 | 13.467295 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37640.1 | ubiquitin 9. polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. | 0 |
| RefSeq | XP_022683373.1 | polyubiquitin [Setaria italica] | 0 |
| Q9FHQ6 | Polyubiquitin 9 OS=Arabidopsis thaliana OX=3702 GN=UBQ9 PE=3 SV=1 | 0 | |
| TrEMBL | K3YMN9 | Ubiquitin-like domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G079400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for gene-BS78_02G013400.